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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832599.1_cds_XP_016504960.1_18346
CDS Infomation

[gene=LOC107822889] [db_xref=GeneID:107822889] [protein=vacuolar protein sorting-associated protein 52 A-like isoform X2] [protein_id=XP_016504960.1] [location=join(16027..16035,16148..16230,16324..16381,16552..16647,19139..19240,19610..19693,21721..21801,22607..22750,27397..27488,28755..28836,32580..32762,33986..34101,34249..34307,34700..34800,37538..37588,39356..39535,39620..39754,40137..40211,40723..40780,40860..41164)] [gbkey=CDS]
Sequence

ATGGCAGAGGCCGACGCAAATAATGGGCCGAAATCTTTCTTGGATTTGGGATCCTTCGTT
GGCGATTTGAATGCTGAGGATGAAACTGCCAGCGATGATATTTCCCTTGAGGGACTTGAG
GAAGAGTTACAAGAATGTGAAACTGATGATGTTGTTGCAAACATACTCTCTAAAGGTACA
ACATTGCGGGAATACGCTAAGGGCGTTGAAAACAATTTGCGGCAAGTTGAACTGGATTCT
ATCCAGGATTACATAAAGGAAAGTGATAATCTAGTCTCACTTCATGATCAAATTCGTGAT
TGTGACATGATCCTATCCCAAATGGAGACCCTTCTCAGTGGATTTCAGGATGAGATAGGT
TCTATAAGTTCGGATATTAAAATTCTCCAAGAGAAGTCTATGGATATGGGGCTGAGGTTG
AAGAATCGCAAGGTGGCAGAGTCAAAGCTGGCAAAGTTTGTCGAAGATATTATTGTTCCT
CCAAGGATGATAGACATAATTGTTGACGGGGAGGTTAATGAGGAATACATGAGGACTCTT
GAAATTTTGAGTAAAAAGCTGAAGTTTGCAGATGCAGACCCCATGGTTAAAACATCAAAA
GCTCTGAAAGATGTTCAGCCTGAGCTAGAAAAACTTCGGCAGAAAGCGGTCTCCAAGGTG
TTTGATTTCATGGTTCAGAAGCTATACGCTTTAAGGAAACCCAAAACTAATATCCAGATC
CTTCAGCAGAGTATCCTTCTAAAATATAAGTATATCCTTTCCTTTCTCAAGGAGCATGGC
AAAGAGGTGTATCTTGAGGTTCGAGCAGCATATATTGACACAATGAACAAGGTTCTAAGT
GCGCAGTTCCGCGCTTATATTCAAGCTTTAGAAAAGCTGCAGCTGGATATAGCAACATCT
AATGATCTGATAGGTGTTGAGACCAGAAGCACAGGTCTTTTTTCAAGAGGAAGAGAACCG
TTGAAGAACAGGTCTGCAGTTTTTGCTCTTGGAGAAAGGATCAACATTCTCAAGGAGATT
GATGAGCCCCCACTAATTCCACATATTGCCGAAGCCAGCTCAAAAAAATATCCGTATGAG
GTCCTTTTCAGGAGTCTGCACAAGCTGCTCATGGATACTGCTTCTTCTGAGTACCTTTTC
TGTGATGATTTCTTTGGAGAAGAGGCGATGTTTTATGATATTTTTGCTGGCCCATTTTCA
GTAATTGATGAGCATTTCGGTACAATCCTTCCCAACAGTTTTGATGCAATTGGCCTGTTG
CTCATGATTCGCATCATACACCAGCACCAGCTTGTAATGTCCAGGCGCCGAATTCCATGC
CTGGATTCATACTTAGACAAGGTCAATATTGCTTTATGGCCACGTTTCAAGATGGTCTTT
GACTTGCACCTCAACAGCTTGCGAAATGCCAATATCAGGACTCTCTGGGAAGATGATGTT
CACCCACATTATGTCATAAGGCGCTATGCTGAGTTTACTGCTTCCCTTATTCACCTTAAT
GTAGAATATGGAGATGGGCAGCTTGAACTGAATCTGGAGAGACTCAGAATGGCTGTTGAT
GACTTGCTTGTCAAGCTAGCCCAAATGTTTGCTAAACAAAAGCTGCAAACAGTGTTCCTT
ATAAACAATTATGACATGACAATATCGGTTCTGAAGGAAGCTGGTCCAGATGGTGGGAAA
ATCCAGCAGCACTTTGAAGAGCTTTTAAAGAATAACACAGCCATATTCGTGGAAGAACTG
CTGTTGGAGCATTTTAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCTGAGGATTCA
AGTAGTAGCACTGAAAGACCTATAACTATTGCTGAAGTCGAGCCGATTGTAAAGGACTTT
GCAAACAGATGGAAAGCTGCTATTGAACTTATGCACAATGATGTCATTACTTCTTTCAGC
AATTTCCTGTGCGGTATGGACATTCTAAGAGCTGCATTAACTCAACTTCTTCTTTATTAT
ACGAGGCTTTCTGATTGTATAAAGAGGATAAATGGTGGGTCTACCTTGAACAAGGATCTT
GTTTCAATTTCATCCATAATGTATGAGATCAGAAAATACTCGAGGACTTTCTAA

Peptide Sequence

PEP ID

XP_016504960.1
PEP Infomation

PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Nicotiana tabacum]
Sequence

MAEADANNGPKSFLDLGSFVGDLNAEDETASDDISLEGLEEELQECETDDVVANILSKGT
TLREYAKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDMILSQMETLLSGFQDEIG
SISSDIKILQEKSMDMGLRLKNRKVAESKLAKFVEDIIVPPRMIDIIVDGEVNEEYMRTL
EILSKKLKFADADPMVKTSKALKDVQPELEKLRQKAVSKVFDFMVQKLYALRKPKTNIQI
LQQSILLKYKYILSFLKEHGKEVYLEVRAAYIDTMNKVLSAQFRAYIQALEKLQLDIATS
NDLIGVETRSTGLFSRGREPLKNRSAVFALGERINILKEIDEPPLIPHIAEASSKKYPYE
VLFRSLHKLLMDTASSEYLFCDDFFGEEAMFYDIFAGPFSVIDEHFGTILPNSFDAIGLL
LMIRIIHQHQLVMSRRRIPCLDSYLDKVNIALWPRFKMVFDLHLNSLRNANIRTLWEDDV
HPHYVIRRYAEFTASLIHLNVEYGDGQLELNLERLRMAVDDLLVKLAQMFAKQKLQTVFL
INNYDMTISVLKEAGPDGGKIQQHFEELLKNNTAIFVEELLLEHFSDLIKFVKTRGSEDS
SSSTERPITIAEVEPIVKDFANRWKAAIELMHNDVITSFSNFLCGMDILRAALTQLLLYY
TRLSDCIKRINGGSTLNKDLVSISSIMYEIRKYSRTF

Transcript Sequence

Gene sequence data has not been registered.